EnTrf@base [ Enset Transcription Factor Data Base ]

Ensete Knowledge Base > Resources >EnTrf@base

TF (Transcription Factor) Search by Family
Advance Search

Ensete ventricosum cv. Input TF Family e.g. bHLH

Transcription Factor distribution on Enset Genome
Methods of the Enset transcription factor (TF) search: Sequenced Enset genomes were BLAST searched against the Plant Transcription Factor Database version 3.0 using an E-value cut off of 10−10. Putative Enset TF were picked from the blast query applying 50% query coverage and 74% homology with the plant TF.
Sources of the genome sequences: The whole genome sequences of Ensete ventricosum cv. "Bedadit" (Genbank Assembly: GCA_000818735.2), Ensete ventricosum cv. "Derea"(Genbank Assembly: GCA_001884805.1), Ensete ventricosum cv. "Jungle Seeds"(Genbank Assembly: GCA_000331365.2) and Ensete ventricosum cv. "Onjamo" (Genbank Assembly: GCA_001884845.1) were retrieved from the NCBI
Reference: Yemataw, Z., Muzemil, S., Ambachew, D., Tripathi, L., Tesfaye, K., Chala, A., Farbos, A., O’Neill, P., Moore, K., Grant, M. and Studholme, D.J., 2018. Genome sequence data from 17 accessions of Ensete ventricosum, a staple food crop for millions in Ethiopia. Data in brief, 18, pp.285-293.